EnrichmentMap

Enrichment map양식
일부러 만드는 경우

• The generic results file is a tab delimited file with enriched gene-sets and their corresponding p-values (and optionally, FDR corrections)
• The Generic Enrichment Results file needs:
  • gene-set ID (must match the gene-set ID in the GMT file),
  • gene-set name or description,
  • p-value,
  • FDR correction value
  • Phenotype: +1 or -1, to identify enrichment in up- and down-regulation, or, more in general, in either of the two phenotypes being compared in the two-class analysis
    • +1 maps to red
    • -1 maps to blue
  • gene list separated by commas

Notes:

1. description and FDR columns can have empty or NA values, but the column and the column header must exist
2. if no value is provided under phenotype, Enrichment Map will assume there is only one phenotype, and will map enrichment p-values to red

http://baderlab.org/Software/EnrichmentMap/UserManual/GenericResultsFiles

출처

http://baderlab.org/Software/EnrichmentMap/UserManual